Scaffold Ga0211729_11399690

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_11399690
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3223
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002267	Metagenome / Metatranscriptome	576	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_113996901	F002267	GAGG	MPIVIGPGIEIGPGVTAGGGFAPTVSLIYDLDAANYSAVPTNGSVTEGTGTTGQRTLTVANAGASISWQSANGGVFRKSNATGTDVIYGGPNWSTGQSYSVFATYKLSATSSGRLLNTQSEATRDWMMGAYNGFVNAFYPNYAVNLPSSGTNVIWNFIWGTWNASTGLGQVYTATSAQPTTTSFTATNLGSGGGPNQIRLFSRSAGTEVQTGDIGFVKAYNGILTLGDVQGLYAQYKTRF